on006269
NEMAR copy of ds006269

Tethered EEG Recordings in Syngap1 rats

This dataset contains 6-hour tethered EEG recordings from wildtype and Syngap1+/Δ-GAP heterozygous (HET) rats, aged 12-16 weeks, collected to study electrophysiological alterations related to SYNGAP1 haploinsufficiency. Recordings span zeitgeber time 3 to 9 under a 12:12 light:dark cycle, providing a resource for investigating cortical activity abnormalities in a rodent model of SYNGAP1-related intellectual disability and epilepsy.

EEG
Issues GitHub OpenNeuro ds006269

Download this dataset

dataset 106.7 GB exceeds 100.0 GB archive limit; use direct download. Use one of the streaming methods below — all resumable. Full download guide →

  1. NEMAR CLI recommended

    Pulls the pinned version + annexed data and resumes cleanly. Install nemar-cli → 

    nemar dataset download on006269
  2. DataLad

    Clone the dataset repo and fetch file content on demand. Docs → 

    datalad clone https://github.com/nemarDatasets/on006269 on006269
cd on006269 && datalad get .
  3. git-annex

    Plain git + git-annex against the dataset repo. Docs → 

    git clone https://github.com/nemarDatasets/on006269 on006269
cd on006269 && git annex get .
  4. Direct files (wget / curl / rclone)

    Every file with a stable, range-resumable URL from the manifest. Needs curl, jq, wget (or rclone/aria2c). Docs → 

    curl -s https://data.nemar.org/on006269/v1.0.0/manifest.json | jq -r '.[].bytes_url' > urls.txt
wget -xc -i urls.txt

Compute on this dataset

Two routes today, with a third (in-browser one-click submission) landing soon.

  1. NeuroScience Gateway (NSG) portal.

    NSG runs EEGLAB / Brainstorm / MNE pipelines on supercomputing time donated by SDSC. Create an account, point a job at this dataset's S3 prefix (s3://nemar/on006269), and submit.
    nsgportal.org →

  2. Local processing with nemar-cli.

    Pull the dataset to your machine and run any toolbox locally. Honors the published version pinning. 

    npm install -g nemar-cli
nemar dataset clone on006269
cd on006269 && nemar dataset get
  3. Just the files.

    rclone, aria2c, or any HTTPS client works against data.nemar.org/on006269/ — the manifest carries presigned S3 URLs.

Direct compute access is coming soon. One-click NSG submission from this page is scoped for a follow-up phase. Tracked on nemarOrg/website#6.

Citations

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