on004837
NEMAR copy of ds004837

Magnetoencephalographic (MEG) Pitch and Duration Mismatch Negativity (MMN) in First-Episode Psychosis

This magnetoencephalographic (MEG) dataset comprises auditory oddball paradigm recordings from participants with first-episode psychosis and healthy controls, designed to investigate mismatch negativity (MMN) responses to pitch and duration deviants. The study includes three participant groups: healthy controls, first-episode schizophrenia, and first-episode affective psychosis patients. Data were collected as part of the Pittsburgh Early Psychosis Program between December 2017 and September 2021. The dataset includes clinical, neuropsychological, demographic, and medication data in the derivatives.

ANAT MEG
Issues GitHub OpenNeuro ds004837

Download this dataset

dataset 119.9 GB exceeds 100.0 GB archive limit; use direct download. Use one of the streaming methods below — all resumable. Full download guide →

  1. NEMAR CLI recommended

    Pulls the pinned version + annexed data and resumes cleanly. Install nemar-cli → 

    nemar dataset download on004837
  2. DataLad

    Clone the dataset repo and fetch file content on demand. Docs → 

    datalad clone https://github.com/nemarDatasets/on004837 on004837
cd on004837 && datalad get .
  3. git-annex

    Plain git + git-annex against the dataset repo. Docs → 

    git clone https://github.com/nemarDatasets/on004837 on004837
cd on004837 && git annex get .
  4. Direct files (wget / curl / rclone)

    Every file with a stable, range-resumable URL from the manifest. Needs curl, jq, wget (or rclone/aria2c). Docs → 

    curl -s https://data.nemar.org/on004837/v1.0.0/manifest.json | jq -r '.[].bytes_url' > urls.txt
wget -xc -i urls.txt

Compute on this dataset

Two routes today, with a third (in-browser one-click submission) landing soon.

  1. NeuroScience Gateway (NSG) portal.

    NSG runs EEGLAB / Brainstorm / MNE pipelines on supercomputing time donated by SDSC. Create an account, point a job at this dataset's S3 prefix (s3://nemar/on004837), and submit.
    nsgportal.org →

  2. Local processing with nemar-cli.

    Pull the dataset to your machine and run any toolbox locally. Honors the published version pinning. 

    npm install -g nemar-cli
nemar dataset clone on004837
cd on004837 && nemar dataset get
  3. Just the files.

    rclone, aria2c, or any HTTPS client works against data.nemar.org/on004837/ — the manifest carries presigned S3 URLs.

Direct compute access is coming soon. One-click NSG submission from this page is scoped for a follow-up phase. Tracked on nemarOrg/website#6.

Citations

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    Files

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    Signal viewer
    How to use the data (for agentic research) license, citation, download commands, Zarr access

    What it is

    Modalities
    ANAT, MEG
    Participants
    60
    Size
    120 GB
    Tasks
    attnmod

    License and terms

    License
    CC0
    Recommended citation
    López-Caballero, F., Curtis, M., Coffman, B., & Salisbury, D. (2026). Magnetoencephalographic (MEG) Pitch and Duration Mismatch Negativity (MMN) in First-Episode Psychosis (Version v1.0.0) [Data set]. NEMAR. https://doi.org/10.82901/nemar.on004837

    Where the bytes are

    Latest version (always current)
    https://data.nemar.org/on004837/latest/
    This version (v1.0.0)
    https://data.nemar.org/on004837/v1.0.0/

    How to download

    The dataset
    nemar dataset download on004837 Clones and fetches in one step. Content under stimuli/ and derivatives/ is skipped by default because those trees can be large; add --stimuli --derivatives for the whole thing.
    A subset, one step
    nemar dataset download on004837 --subjects sub-01,02 Also filters by --sessions, --tasks, --runs, --datatypes, --include and --exclude.
    A subset, step 1
    nemar dataset clone on004837 Clones git-annex pointers only; fetches no file content. Creates ./on004837.
    A subset, step 2
    cd on004837 The get command below reads the clone's annex, so it only works from inside the clone.
    A subset, step 3
    nemar dataset get <files> Pulls the files you actually need. Skips stimuli/ and derivatives/ unless the path you ask for is under one of them.
    One small file
    https://data.nemar.org/on004837/v1.0.0/participants.tsv A direct HTTPS fetch works for any single file.

    Assess fit without downloading

    Participants table
    https://data.nemar.org/on004837/v1.0.0/participants.tsv
    Dataset description
    https://data.nemar.org/on004837/v1.0.0/dataset_description.json
    Directory listing
    https://data.nemar.org/on004837/v1.0.0/?format=json
    Catalog record
    https://api.nemar.org/datasets/on004837

    Working with the Zarr copy

    1. Start at the index
    https://zarr.nemar.org/on004837/zarr/index.json The mandatory entry point. Never hardcode a bucket path.
    2. Pick a store entry
    stores[].zarr, stores[].groups[].name These two fields exist in every index format version, so a recipe that keys on them works against the whole catalog while the back conversion is still in flight.
    3. Build the store URI
    s3://nemar/on004837/zarr/{store.zarr} Derivable from the store entry alone. An index at format_version 3 or later also publishes contract_base, data_base and s3_uri; use them when they are there, never require them.
    4. Open the store anonymously
    zarr.open_group(store=..., mode="r", zarr_format=3) Anonymous FsspecStore.from_url in region us-east-2, no credentials. zarr_format=3 is required: without it zarr-python probes for Zarr v2 sidecars, and because anonymous ListBucket is denied, S3 answers a missing key with 403 rather than 404 and the open raises.
    5. Read the level-0 array
    root[store.groups[0].name]["0"] Level 0 is the full-rate signal. Never read a view/ array for inference; those exist for display.
    6. Dequantize the samples
    physical = digital * scale + offset scale and offset are attributes of the level-0 array, one entry per channel; the unit is on the group's channels attribute.
    7. Slice, don't download
    signal[0:4, 0:500] Stream a window of channels and samples; download only when you will touch most of the array.
    8. Know the HTTP contract
    index.json Only index.json is always proxied and edge-cached. A plain GET for a store object, manifest.json or events.parquet 302s to the public S3 object for non-browser clients, so follow redirects, and HEAD is never redirected.
    9. Read the attribution before reuse
    root.attrs["nemar"] The store carries its own dataset id, DOI, license, citation and source commit.
    10. Filter for pipelines
    has_zarr=1 This is the converted filter. has_zarr_verified is the stricter one, and its result set can be empty until the daily fidelity sweep reaches a dataset; verification is reported, never a precondition for serving (nemar-cli ADR 0005).