on002885
NEMAR copy of ds002885

DBS Phantom Recordings

This dataset comprises magnetoencephalography (MEG) recordings from a CTF phantom used to evaluate and compare deep brain stimulation (DBS) artifact rejection methods. The phantom recordings serve as a controlled reference for assessing the comparative performance of various artifact rejection techniques in MEG data contaminated by DBS-related artifacts, providing a standardized benchmark for methodological validation.

MEG
Issues GitHub OpenNeuro ds002885

Download this dataset

Pick a method. Large datasets skip the zip and use the streaming methods below — all resumable. Full download guide →

  1. Download archive (.zip) — 11.1 GB

    A single zip of the published version. Best for small/medium datasets.

    Download zip

  2. NEMAR CLI recommended

    Pulls the pinned version + annexed data and resumes cleanly. Install nemar-cli → 

    nemar dataset download on002885
  3. DataLad

    Clone the dataset repo and fetch file content on demand. Docs → 

    datalad clone https://github.com/nemarDatasets/on002885 on002885
cd on002885 && datalad get .
  4. git-annex

    Plain git + git-annex against the dataset repo. Docs → 

    git clone https://github.com/nemarDatasets/on002885 on002885
cd on002885 && git annex get .
  5. Direct files (wget / curl / rclone)

    Every file with a stable, range-resumable URL from the manifest. Needs curl, jq, wget (or rclone/aria2c). Docs → 

    curl -s https://data.nemar.org/on002885/v1.0.0/manifest.json | jq -r '.[].bytes_url' > urls.txt
wget -xc -i urls.txt

Compute on this dataset

Two routes today, with a third (in-browser one-click submission) landing soon.

  1. NeuroScience Gateway (NSG) portal.

    NSG runs EEGLAB / Brainstorm / MNE pipelines on supercomputing time donated by SDSC. Create an account, point a job at this dataset's S3 prefix (s3://nemar/on002885), and submit.
    nsgportal.org →

  2. Local processing with nemar-cli.

    Pull the dataset to your machine and run any toolbox locally. Honors the published version pinning. 

    npm install -g nemar-cli
nemar dataset clone on002885
cd on002885 && nemar dataset get
  3. Just the files.

    rclone, aria2c, or any HTTPS client works against data.nemar.org/on002885/ — the manifest carries presigned S3 URLs.

Direct compute access is coming soon. One-click NSG submission from this page is scoped for a follow-up phase. Tracked on nemarOrg/website#6.

Citations

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    Files

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    Signal viewer
    How to use the data (for agentic research) license, citation, download commands, Zarr access

    What it is

    Modalities
    MEG
    Participants
    2
    Size
    20.1 GB
    Tasks
    DMW, DSMW, EmptyRoom, Reference

    License and terms

    License
    CC0
    Recommended citation
    Kandemir, A. L., Litvak, V., & Florin, E. (2026). DBS Phantom Recordings (Version v1.0.0) [Data set]. NEMAR. https://doi.org/10.82901/nemar.on002885
    Reference
    https://doi.org/10.1016/j.neuroimage.2020.117057.

    Where the bytes are

    Latest version (always current)
    https://data.nemar.org/on002885/latest/
    This version (v1.0.0)
    https://data.nemar.org/on002885/v1.0.0/

    How to download

    The dataset
    nemar dataset download on002885 Clones and fetches in one step. Content under stimuli/ and derivatives/ is skipped by default because those trees can be large; add --stimuli --derivatives for the whole thing.
    A subset, one step
    nemar dataset download on002885 --subjects sub-01,02 Also filters by --sessions, --tasks, --runs, --datatypes, --include and --exclude.
    A subset, step 1
    nemar dataset clone on002885 Clones git-annex pointers only; fetches no file content. Creates ./on002885.
    A subset, step 2
    cd on002885 The get command below reads the clone's annex, so it only works from inside the clone.
    A subset, step 3
    nemar dataset get <files> Pulls the files you actually need. Skips stimuli/ and derivatives/ unless the path you ask for is under one of them.
    One small file
    https://data.nemar.org/on002885/v1.0.0/participants.tsv A direct HTTPS fetch works for any single file.

    Assess fit without downloading

    Participants table
    https://data.nemar.org/on002885/v1.0.0/participants.tsv
    Dataset description
    https://data.nemar.org/on002885/v1.0.0/dataset_description.json
    Directory listing
    https://data.nemar.org/on002885/v1.0.0/?format=json
    Catalog record
    https://api.nemar.org/datasets/on002885

    Working with the Zarr copy

    1. Start at the index
    https://zarr.nemar.org/on002885/zarr/index.json The mandatory entry point. Never hardcode a bucket path.
    2. Pick a store entry
    stores[].zarr, stores[].groups[].name These two fields exist in every index format version, so a recipe that keys on them works against the whole catalog while the back conversion is still in flight.
    3. Build the store URI
    s3://nemar/on002885/zarr/{store.zarr} Derivable from the store entry alone. An index at format_version 3 or later also publishes contract_base, data_base and s3_uri; use them when they are there, never require them.
    4. Open the store anonymously
    zarr.open_group(store=..., mode="r", zarr_format=3) Anonymous FsspecStore.from_url in region us-east-2, no credentials. zarr_format=3 is required: without it zarr-python probes for Zarr v2 sidecars, and because anonymous ListBucket is denied, S3 answers a missing key with 403 rather than 404 and the open raises.
    5. Read the level-0 array
    root[store.groups[0].name]["0"] Level 0 is the full-rate signal. Never read a view/ array for inference; those exist for display.
    6. Dequantize the samples
    physical = digital * scale + offset scale and offset are attributes of the level-0 array, one entry per channel; the unit is on the group's channels attribute.
    7. Slice, don't download
    signal[0:4, 0:500] Stream a window of channels and samples; download only when you will touch most of the array.
    8. Know the HTTP contract
    index.json Only index.json is always proxied and edge-cached. A plain GET for a store object, manifest.json or events.parquet 302s to the public S3 object for non-browser clients, so follow redirects, and HEAD is never redirected.
    9. Read the attribution before reuse
    root.attrs["nemar"] The store carries its own dataset id, DOI, license, citation and source commit.
    10. Filter for pipelines
    has_zarr=1 This is the converted filter. has_zarr_verified is the stricter one, and its result set can be empty until the daily fidelity sweep reaches a dataset; verification is reported, never a precondition for serving (nemar-cli ADR 0005).